If you have the expression values of LncRNA of your interests across different conditions, you can apply any method that is been used for differential expression analysis. As you have already said, "Limma" would be a good choice
Hi everyone, I had a question with regards to a GEO dataset: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92776. The link says that this data contains expression profiling from RT PCR …
Hello there, I am a beginner, Now I initially know how to use "affy" package and "limma" package to find Affymetrix chip differentially expressed genes. …
how to analysis different platform array with R? And i find there are different format raw_data,eg:cel and txt. what is the differene between them. i …
I downloaded a set of summaries about gene expression data sets from NCBI (for example of file format, if you go to https://www.ncbi.nlm.nih.gov/gds and searched …
Hi everybody, I want detect lncRNA from some human (control and treatment) RNA-seq data ( Illumina sequencing data) in fastq format, I detect genes and …
I am trying to find very specific GEO dataset (http://www.ncbi.nlm.nih.gov/gds) for my study. I am able to filter geo sets according organism and study type, …
Do you have the LncRNA expression levels from your expression profiling array ?
it is from GEO....
what about ballgown? when I use ballgown, I can not add genename to the my output csv?how to solve it?