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There are some empty Scaffolds in genome assembly (ID known), how I can remove them.

HI I have a genome assembly of fasta formate , there are some empty Scaffolds in it (ID are known), how I can remove them. please help.

thanks

assembly
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updated by GenoMax GenoMax • written by mujahid.ali • mujahid.ali

1 answer

If the ID's are known then use the solution in this thread: How to remove sequences from a fasta file based on ID list?

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written by GenoMax GenoMax

thanks !!! this pipeline worked > ./faSomeRecords -exclude your_original.fa id_to_exclude final.fa

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written by mujahid.ali • mujahid.ali

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