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using blastall option in terminal

Hello friends

I am trying to run the code before but my version of blast, 2.2.30+, does not have these options. Does anyone happen to be familiar with this syntax? The current version does not use this is syntax but I was asked to use blastall. 

blastall -p blastn -i <query> -d <database> -b 2 -v 2 -m 7 -o results.xml

Thanks friends

ncbi-blast blastn
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updated by h.mon h.mon • written by ggman ggman

1 answer

You either download and install BLAST legacy, or adapt your command-line to BLAST+. With blastp -help and a decripton of blastall options you will be able to translate old parameters into the new ones.

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written by h.mon h.mon

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