using blastall option in terminal

Question

[ggman]

Hello friends

I am trying to run the code before but my version of blast, 2.2.30+, does not have these options. Does anyone happen to be familiar with this syntax? The current version does not use this is syntax but I was asked to use blastall.

blastall -p blastn -i <query> -d <database> -b 2 -v 2 -m 7 -o results.xml

Thanks friends

Answer 1

[h.mon]

You either download and install BLAST legacy, or adapt your command-line to BLAST+. With blastp -help and a decripton of blastall options you will be able to translate old parameters into the new ones.