Is there a way to cluster 2 or 3 bed files according to a window size?
I have few bed files I wish to cluster according to a window size. Is there a tool that can help me do that?I'm using perl
genome
sequencing
bedtools
• 1,328 views
•
link
written
by
mohamad.merhi96 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Disable automatic merging of consecutive windows in DeepTools bamcoverage
written by marion.prieler •Hi all, I'm using deeptools bamcoverage to output the coverage of my bam files window by window. For my analysis the windows have to be …
-
Best R packages for imagine Next Gen Sequencing Reads
written by gocougs •Hi, I usually take screen shots of IGV to show read coverage across a few interesting genes. Is there a better way to do this? …
-
SNP Files to VCF files in terminal window
written by Sa •Hi, I am using MacOS, and I am having a bit of trouble in viewing a few germline SNP files that I have. First, I …
-
quantification RNAseq and normalization
written by kml •Hi, I'm new in this, so a bit confused and would appreciate your help. I'm using Galaxy for analyzing my RNAseq data. so far I've …
-
Calculating Tajima's D from vcf data using bed files
written by spiral01I need to calculate Tajima's D for vcf data, using a bed file to indicate the windows in which I want to calculate the statistic. …
-
How can I find to which regions and chromosomes in a bed file does a chromosome in another file map…
written by mohamad.merhi96 •I have two bed files, first one was the input.bed, second one is produced by mapping to the first one. Lets call it output.bed. In …
-
How to plot an ideogram for two bed files with different number of rows in R?
written by mohamad.merhi96 •I'm trying to create an ideogram for human vs mouse to recognise the common and different transcription factor binding sites . I have two bed …
-
Which R package is the best to compare and visualise two bed files?
written by mohamad.merhi96 •I have two bed files 4 columns each , they contain data about transcription factors . I want to compare them in ideograms, to see …
-
Intron and exon distribution in a genome
written by xiaofeng.dong12 •Hi everyone! May I ask a question? I wish to plot the exon and intron length distribution with a given window size (e.x 5000bp) in …
-
How To Convert Bed Format To Gtf?
written by ftpHello, I've seen a lot of posts that convert gtf to bed files. However, I have a bed file that I'm trying to convert to …
I hope there is a way