MapInspect data input

Hello, I have Chromosome length in bases, position of genes (start-end) in bases. While locating on chromosome using these data all genes are clustering at the tip of chromosome. please hep he how to feed input data.

Chromosome size 29149675

Group ID    Chr start
gene1   1   1379813
gene2   1   2968099
gene3   1   4961240
gene4   1   12529832
gene5   1   15769846
gene6   1   16864709
gene7   1   20129732
gene8   1   26310063

genome

• 1,764 views • link

updated 9.1 years ago by WouterDeCoster

• written 9.1 years ago by mrgyadav •

I added markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below:

101010 Button

• 0 views • link

written 9.1 years ago by WouterDeCoster

0 answers

No answers yet.

More posts like this

How to make a dotplot for bulk RNA average expression ?
written 3.2 years ago by LionisOne •

Could any can tell, how to make a dotplot for average bulk RNAseq expression data ? I know how to do it with scRNAseq data, …
expanding a table by duplicating rows of a specific pattern
written 3.8 years ago by Assa Yeroslaviz

I have a huge matrix with intensity values. In the first column some of the identifier have multiple entries, separated by a `;`. I would …
How to extract only the specific fasta sequences by matching the ID's to a different source files ?
written 5.3 years ago by pinn

Hi I had 1000's of Multiline text files with sequence ID's, each text file has only 9 sequence ID's. **Example file:** >gene1 >gene2 >gene3 >gene4 …
filtering out lines (rows) based on repeated zero values with awk in linux
written 6.5 years ago by rgescudero •

I want to filter out lines having zero values in more than 70% of the columns. Imagine I have the following “test_awk.txt” file id sample1 …
TOPGO- how to do GO enrichment using a custom go database?
written 7.7 years ago by ahmad.iut

Hello Biostars, I want to do GO-enrichment analysis for a non-model organism. I have these tab-delimited files: reference (two columns): genename GOs gene1 GO:1, GO:2,GO:3 …
Replace tip names in a newick file
written 11.4 years ago by tlorin

Hello everyone :) I have a collection of newick-formatted files containing gene IDs: ``` ((gene1:1,gene2:1)100:1,gene3:1)100; ((gene4:1,gene5:1)100:1,gene6:1)100; ``` I have a list of equivalence between gene …
Filtering materials of two columns in R
written 11.7 years ago by mjoyraj

I have a two column dataset as given below. I want to add a third column which will contain all genes from column 1 and …
MDS plots with R
written 12.2 years ago by Biogeek

Can someone give me a simple code so that I can plot an MDS plot for the example data below, I want to compare 9 …
How to prepare GSEA Pre-Ranked input file
written 12.3 years ago by biorepine

Dear Biostars, I have a file representing correlation values of certain genes (row) and transcription factors binding sites (colums). I would like to convert this …
Mapping Pathways To Genes
written 12.4 years ago by juncheng

Hi! I want to assign pathways to a gene (protein) list like this: <pre><code>gene1 path1 path2 gene2 path3 path4 path5 path6 gene3 path7 path8 path9 …