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coding potential tool for de novo assembled transcripts for plant species

Is there any other tool than CPC for calculation of coding potential for de novo assembled transcripts for plant species whose genome sequences is not available.

Thanks Yogesh

rna-seq
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updated by vmicrobio vmicrobio • written by Bioinfonext Bioinfonext

1 answer

Hi nabiyogesh,

I would recommend COME (code source and paper).

I also heard about PLEK (code source and paper) and CPAT but never used it

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written by vmicrobio vmicrobio

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