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how to search for retinoic acid response element in my sequence file

Hi All,

I have a DNA sequence of about 10 kb, and I want to search for retinoic acid response element within that sequence. Can you recommend a software or an approach to do this.

Thanks Tarek

mapping dna-seq rare
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updated by Istvan Albert Istvan Albert • written by tarek.mohamed tarek.mohamed

1 answer

To search for sequence patterns in your data you could use seqkit grep or seqkit locate

https://github.com/shenwei356/seqkit

or dreg and fuzznuc in emboss.

http://emboss.bioinformatics.nl/cgi-bin/emboss/help/dreg

Plus many other tools.

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written by Istvan Albert Istvan Albert

Hi Istvan, Thanks for your reply

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written by tarek.mohamed tarek.mohamed

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