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Correction of errors or mismatches in the read file

Hi,

I am testing BBMap tool, so I want to correct any errors or mismatch in the read file. How do I go about this process, Any suggestion for command or tool would be appreciated. Can i do this process using samtool?

Thanks

samtools sequence alignment
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updated by Ram Ram • written by madhu.9124 • madhu.9124

1 answer

BBMap itself is able to error correct (e.g. tadpole.sh and bbnorm.sh from BBMap suite - tadpole and BBMap suite - BBNorm).

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written by GenoMax GenoMax

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