Bioconductor Graphite package : Cannot retrive pathways
Hello everyone
I am trying to use this package graphite for pathway analysis from gene expression data of Rice( Oryza sativa) . However, I cannot retrieve the pathways from kegg using this package. I am using this code osa <- pathways("Oryza sativa" , "kegg")
Firstly can it be used for organisms other than listed in pathwayDatabases() ? If so, how to do that ?
Thanks in advance.
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What's the version of graphite you're using ? Non-human data has only been made accessible from version 1.14.
I am using version 1.22.0.