R script - Error: protect(): protection stack overflow
Hey everyone! I've been trying to run an R script for the past couple of days, but unfortunately, I always end up getting the following error: Error: protect(): protection stack overflow
The script runs the t-SNE algorithm over a large matrix,and probably fails to run due to a memory limit. I've tried to increase the max-ppsize parameter, but no luck.
Any ideas?Thanks!
• 7,922 views
•
link
written
by
Chen Mor •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Error Scaffolding with RagTag
written by Bipin •
-
STRUCTURE runs failing: core dumping and slurm exit code 10?
written by katherinedrotos •
-
Error: protect(): protection stack overflow model matrix
written by bart •
-
How to annotate DMVs in methylation data (via RHmm) ?
written by Bosberg •
-
Problems with R (protect() -> stackoverflow)
written by Esra •
-
BLAST parallelisation best practices
written by timothy.kirkwood •
-
OrthoMCL issue with BLAST and mySQL
written by merwright •
-
Forum: Python for biologists: Interview to Martin Jones
written by Physalia-courses
-
News: Thinking of learning Linux/Python?
written by Physalia-courses
-
Tool: pybam - 100% python BAM reader
written by John
It would not be possible to find a solution to a problem without actually looking at the problem. Posting the link to script will help find a reason for this error.
cross-posted on stackoverflow. It's not a good practice to cross-post. https://stackoverflow.com/questions/44674132/r-script-error-protect-protection-stack-overflow
Anyway did you try on a small subset of your data ? What is the size/dimension of your data ?