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How to calculate the sequence change of LoRDEC

Is there any convenient method to calculate that after the error correction method(like LoRDEC),how many bases are rightly corrected and how many bases are wrongly corrected. It would be better if I can get the information about the exact position and difference between the error correction process.

Thanks for your help!

tgs pacbio lordec error correction alignment
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updated by symcong • symcong • written by jianzheng934963534 • jianzheng934963534

LoRDEC outputs the corrected reads to the given file in FASTA format. The regions that remain weak after the correction are outputted in lower case characters and the solid regions are outputted in upper case characters.

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written by st.ph.n st.ph.n

But can I know if the baess of solid region actually change or not?

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written by jianzheng934963534 • jianzheng934963534

It appears solid regions are outputted in upper case chars.

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written by st.ph.n st.ph.n

1 answer

Do you solve the problem?I need the help,too

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written by symcong • symcong

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