Hello everyone,

In order to run some homology modeling predictions with PDB structures, I have been trying to automate this work. So far I have tried some iteration processes in the Linux shell, similar to this one:

“”sudo sh -c 'for i in ; do ./Scwrl4 -i /home/user/Desktop/Folder/.pdb -o /home/user/Desktop/Folder/*.pdb; done'””

But so far, no success.

The idea is to automate the [./Scwrl4 -i input.pdb -o output.pdb] for many files in a folder so I don’t have to do it one by one. I was thinking of executing the program from a python script, but this just might be too slow. Perhaps there is more efficient method, like some function in Scwrl4 to automate the process? Or maybe, can you give me some ideas? :-)

Thank you.