combine CNV calls from different softwares

Question

[Myosotis1979]

Hi guys

I have generated CNV calls from PennCNV, R-Gada and QuantiSNP. I would like to generate a consensus of these CNVs by merging them and only keep those that was detected by at least 2 methodes. Is there a software that can handle the different formats and generate the desired output? Otherwise, any other suggestion is appreciable.

Thanks :)

[Kevin Blighe]

A good starting point would be to paste some output that you have from each program. In short, yes, there are most certainly customised ways of meta-analysing the output from these programs.