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converting strange gene id to gene names

Hi,

I was given two strange gene IDs coming from RNA-seq in chiness spring (wheat)

TRIAE_CS42_1AL_TGACv1_000363_AA0010190

TRIAE_CS42_1AL_TGACv1_000406_AA0011290

whatever I search I can't get they are belong to which gene names,

I tried this biostars forum but no clue Gene Id Conversion Tool

do you have any idea?

thank you

gene id conversion
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updated by Emily Emily • written by zizigolu zizigolu

What is the assignment here? Just the conversion? Those may be some sort of transcript ID's and many not have actual annotation.

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written by GenoMax GenoMax

Thank you, I have a list of such a transcripts that should be converted to gene name, symbole, entrez, etc. but no DAVID neither another tools supported them.

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written by zizigolu zizigolu

Well unless you are willing to spend lots of time figuring out what each of those is, not much you may be able to do.

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written by GenoMax GenoMax

1 answer

Thank you, how I can convert my list to UniProt ids?? because hereafter I would be able to perform GO classification on these validated ids, with these strange IDs no annotation tool gives GO terms.

• 0 views • link
written by zizigolu zizigolu

With BioMart. Or you could bypass Uniprot and just get the GO terms from BioMart.

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written by Emily Emily

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