Delete NAN values within a list of several components WGCNA
Hello, Im working with WGCNA, and I run all the code good except when I run the module Eigengenes, in which I got NAN values. How can I delete them?
I realized the structure of MEList is a list with several components (12 in this case). And I get MEgrey module with NaN values. It affects downstream process. How can I solve this?
MEList1 = moduleEigengenes(datExpr, colors = dynamicColors)
str(MEList1)
List of 12
$ eigengenes :'data.frame': 15 obs. of 59 variables:
$ MEbisque4 : num [1:15] -0.195 -0.424 -0.399 -0.315 0.296 ...
$ MEgrey : num [1:15] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ...
$ MEgrey60 : num [1:15] -0.1556 -0.2304 -0.2371 -0.1066 -0.0272 ...
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WouterDeCoster
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adriana.gallego.02 •
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I added 'wgcna' as a tag to your question so people can easily find your post. 'rna-seq' is way to generic.
I would wonder how I got these NaN values, and solve that, rather than trying to remove them.