breakseq2 non human data

Hi all,

I'm trying to use Breakseq2 to detect structural variants on my data.

Unfortunately I'm not working on human data, and then, cannot use the breakpoint library given in parameters. ( http://bioinform.github.io/breakseq2/)

When I try to use the programme without this parameter I have the following message :

" Atleast one of the breakpoint FASTA or GFF must be specified ", and it doesn't work either with an empty file.

Does anyone knows a way of using Breakseq2 without giving a breakpoint library file?

Thanks

Guillaume

indel structural variants bam

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written 9.2 years ago by guillaume.rbt

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