breakseq2 non human data

Question

[guillaume.rbt]

Hi all,

I'm trying to use Breakseq2 to detect structural variants on my data.

Unfortunately I'm not working on human data, and then, cannot use the breakpoint library given in parameters. ( http://bioinform.github.io/breakseq2/)

When I try to use the programme without this parameter I have the following message :

" Atleast one of the breakpoint FASTA or GFF must be specified ", and it doesn't work either with an empty file.

Does anyone knows a way of using Breakseq2 without giving a breakpoint library file?

Thanks

Guillaume