I'm trying to convert a VCF file to a 23andme file. I run VCFTools to convert it to TPED. But then when I run plink1.9 to convert it to 23andme, I get the following error:
"Error: --recode 23 cannot be used with multi-character allele names."
What should I do?
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written
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beneficii •
a bit late but ... That's because current plink can not manage indels, then, only one base is allowed at ref or alt field. Try to add this: --snps-only
Actually, plink can handle indels, it's the 23andMe format which can't really represent them.
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