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Binary to DNA sequence

Hello,

Can anybody please teach me how to convert binary to ATCG?

I have two sets of bed/bim/fam files.

  1. The first files. The sequences are shown as binary.
  2. The second files. These are after imputation of the first files. The sequences are shown as ATCG. Some SNPs in the first files are missing in the second files.

I want to convert binary to ATCG in the first files, using the results of the second files.

Thank you in advance!

snp genome sequence plink
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updated by zx8754 zx8754 • written by khn khn

Thank you so much. I have created the vcf files from the second files, but can you please tell me what would be the next step?

• 0 views • link
written by khn khn

1 answer

The script to do it is available at

https://github.com/abhijeetsingh1704/BINARY_to_DNA/blob/master/BINARY_2_DNA.sh

• 1 views • link
written by vishwaas1704 • vishwaas1704

I don't think this is relevant.

• 1 views • link
written by zx8754 zx8754

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