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salvatore.digiorgio •
tcga slice bam downloading problem
Hello everybody...! I'm trying to download ran-seq slice bam from TCGA. I used following command line:
curl -H "X-Auth-Token: $token" "https://gdc-api.nci.nih.gov/slicing/view/02182379-e10d-4ca2-8cc9-af33e4194ff8?$regions" > Temporany.bam
Where: $regions are the list about 1700 gene positions (ex. region=chr1:xxxx-xxxxx®ion=chr2:xxxx-xxxx etc...). But it gives me the following errors:
curl: (56) SSLRead() return error -9806.
Did anyone face the same issue? If yes, how does one resolve this. Thanks.
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muraveill •
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salvatore.digiorgio •
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salvatore.digiorgio •
1 answer
Maybe your curl has not been built including openssl, for instance in the install docs, you can
./configure --with-ssl
before building (from https://curl.haxx.se/docs/install.html). If you use Mac with Homebrew, there is this option:
brew install --with-openssl curl
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muraveill •
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