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GSEA - significantly enriched gene sets

I recently performed GSEA analysis for my studies with 10000 permutations (Msig database for gene sets) but GSEA reported that

0 gene sets are significant at FDR < 25%

Can someone suggest how to extract the list of

Gene sets are significantly enriched at nominal pvalue < 1%

Gene sets are significantly enriched at nominal pvalue < 5%

from the results.

Thanks.

gsea gene set enrichment analysis
• 140 views • link
written by Mk • Mk

You need to add more information, e.g. the methods you used to reach this point, the biological background of your data, etc.

• 0 views • link
written by H.Hasani H.Hasani

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