Getting profit (plots, data) from my final GO enrichment analysis..
I've done with a GO enrichment analysis after running a DE analysis, and ended with a file like this
gene02308-v1.0-hybrid GO:0005773, GO:0006950
gene02380-v1.0-hybrid GO:2000033, GO:2000280
gene03187-v1.0-hybrid GO:0005739, GO:0006974, GO:0008270, GO:0009228, GO:0009409, GO:0009570, GO:0009579, GO:0009941, GO:0010319, GO:0016491, GO:0018131, GO:0042803, GO:0055114
gene03388-v1.0-hybrid GO:0005515, GO:0008270
gene04244-v1.0-hybrid GO:0004672, GO:0005524, GO:0006468
gene07998-v1.0-hybrid GO:0005506, GO:0005773, GO:0006631, GO:0010345, GO:0018685, GO:0020037, GO:0055114
gene08674-v1.0-hybrid GO:0004970, GO:0016020
gene08810-v1.0-hybrid GO:0003885, GO:0016020, GO:0019853, GO:0050105, GO:0050660, GO:0055114
gene09063-v1.0-hybrid GO:0005737, GO:0006629, GO:0009626, GO:0016020, GO:0016298, GO:0031408, GO:0046686, GO:0051607, GO:0071456
gene09384-v1.0-hybrid GO:0005215, GO:0005737, GO:0009505, GO:0009506, GO:0009630, GO:0009734, GO:0009908, GO:0009921, GO:0009925, GO:0009926, GO:0010051, GO:0010229, GO:0010338, GO:0010358, GO:0016021, GO:0045177, GO:0048826, GO:0048830, GO:0055085
gene09410-v1.0-hybrid GO:0004567, GO:0005975, GO:0009505, GO:0022626, GO:0047668, GO:0080079, GO:0080081, GO:0080082, GO:0080083
gene09663-v1.0-hybrid GO:0003677
gene11153-v1.0-hybrid GO:0016021
gene11630-v1.0-hybrid GO:0004674, GO:0005524, GO:0006468
gene12335-v1.0-hybrid GO:0008519, GO:0016020, GO:0072488
gene12684-v1.0-hybrid GO:0005829, GO:0008152, GO:0016758
.....
I want to get nice plots and figures of these data, including clustering, etc Can you kindly recommend any R package or the like for this purpose ?
• 1,969 views
•
link
0 answers
No answers yet.
Log in to answer this question.
If you do you enrichment in goseq, you can cluster GO terms (in heatmap) with gogadget. Or cluster them with cytoscape afterwards.