miRanda only displays hits?
Hi,
Is it possible that the output file of miranda only displays hits, without also displaying all those where no hits were found?
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stijn.vandenbrande •
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Someone already solve this problem by just extracting the info of the hits executing
grep -A 1 "Scores for this hit:" rad.txt | sort | grep >You can see the original thread here :)
Thanks! How should I command this in terminal? If i run miranda: file1 file2 and then add "grep -A 1 "Scores for this hit:" rad.txt | sort | grep >", it gives an error?
So miRanda works like this:
miranda file1 file2 -o file3So after the results are saved on file3, you can write
grep -A 1 "Scores for this hit:" file3 | sort | grep '>'. If you just want the hits and not have an intermediate file, just typemiranda file1 file2 | grep -A 1 "Scores for this hit:" file3 | sort | grep '>'