Proteome-genome cross reference

Hello there

I wonder if anyone can help me. I need to check the gene sequence of all proteins from a bacteria's proteome,I need to compare the first few codons. Are there any tools out there that can help me with this?

Thanks in advance.

proteome genome

• 1,479 views • link

written 9.3 years ago by bpz •

0 answers

No answers yet.

More posts like this

Question about sequence alignment
written 3.1 years ago by Bad10 •

I have a protein FASTA sequence file from a specific reference strain. I would like to compare this sequence to the sequences of ~150 other …
Reference proteomes from uniprot in FASTA format, why is there only one sequence per gene?
written 3.6 years ago by Jobbe •

While downloading the human proteome in fasta format from the uniprot site, I noticed that it was mentioned that there was one protein per sequence …
Trying to retrieve set of protein sequences based on gene IDs
written 3.9 years ago by JONATHAN •

Hello all, I have a large dataset of NCBI gene IDs, and need to retrieve their corresponding protein sequences. Are there any data mining tools …
Question about chromosomal instability
written 7.3 years ago by Vasu

I have copy number data. I'm interested in measuring chromosomal instability of a specific gene computational way. Are there any tools or packages to measure …
Features for detection of gene.
written 8.7 years ago by anu014

Hello Biostars! Today I'm little bit more into biology. I was reading about the characteristics of gene like the gene contains 5' end; promoter; exon …
How to download VCF file of a specific human gene?
written 9.4 years ago by insanenostalgic •

Hello everyone, I am a total beginner in biomedical. The first step I need to do in my program in to compare some algorithms based …
Best way to compare rate of amino acid change between proteins?
written 11.7 years ago by Rubal

Hello Everyone, I need to compare the rate of change in amino acid sequence between a set of human proteins. The more species that can …
Split the sequences of a file containing around 10K fasta sequences and check each sequence for the…
written 12.2 years ago by vivek.arora15693 •

Hello All, I am working on a database for the non AUG codons and I have a fasta file that I downloaded from refseq from …
Prediction of Proteome disorder
written 12.3 years ago by eka0700 •

Hello everyone, I'm going with plant proteome & trying to predict disorder of those proteins. But I didn't find any server which can predict the …
Non-Redundant Data Sets Of Protein
written 12.4 years ago by eka0700 •

<p>Hello everyone,</p> <p>I'm working with plant proteome. As there are huge number of proteins in a proteome, I want to filter out the protein number …