I am new to plink and i am using it to detect the runs of homozygosity ROH. which output file do I use to estimate inbreeding, the plink.hom or plink.indv?
I had a multi sample vcf file. I now want to identify runs of homozygosity and calculate the wright's inbreeding coefficient for the population. What …
Hello everyone, I have tried to input a GVCF file in PLINK to detect Runs Of Homozygosity (ROH) using the following scripts: plink --vcf GVCF_SNPs_edit.vcf …
Hi, I am using plink to calculate runs of homozygosity. For 50k ovine data. After Quality control I use folow comand: plink --file mydata --homozyg-snp …