How to add SNP position to METAL result
Hello, I got result files from METAL for my GWAS association test. Here are first several lines output from METAL:
MarkerName Allele1 Allele2 Freq1 FreqSE MinFreq MaxFreq Weight Zscore P-value Direction HetISq HetChiSq HetDf HetPVal
rs34311986 a g 0.9340 0.0000 0.9340 0.9340 469.00 -2.350 0.01879 -- 77.1 4.358 1 0.03685
rs233168 a g 0.1609 0.0084 0.1510 0.1680 469.00 1.087 0.2769 ++ 0.0 0.394 1 0.5302
rs2084466 a g 0.5854 0.0207 0.5610 0.6030 469.00 -1.105 0.2689 -- 0.0 0.126 1 0.7227
rs9855534 t c 0.6831 0.0187 0.6610 0.6990 469.00 0.338 0.7356 +- 73.6 3.788 1 0.05161
rs6550257 c g 0.4820 0.0118 0.4680 0.4920 469.00 0.323 0.7467 ++ 0.0 0.028 1 0.8673
I am wondering how to add SNP position and chromosome number to each marker.
Thanks~
Shirley
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