density of reads that mapped to the specific gene
I have RNA-seq data and want to get the density of reads that mapped to the specific tRNA. do you know how to do that?
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alirezamomeni707 •
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Density? Do you mean counting the reads overlapping a gene?
yes. and then I would make a density plot.
For counting reads you can use tools such as featureCounts and htseq-count.