Comparing MAF of multiple SNP against several populations using chi-squared analysis

Question

[maroua.boujemaa]

Good Morning,

I want to compare MAF of a list of SNPs relative of my population againt several populations from 1000 genomes project. I want to know if there is a command on PLINK that allowed me to compare all alleles frenquencies of my own population againt the other populations in the same time ?!!

Thank you in advance for your help