This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Extract transcript from genome guided assembly based on class code using gffread

Hi,

I used CuffCompare to compare the genome guided assembled GTF file with the genome annotation. Now I want to extract transcripts with class codes annotated with “u”, “x,” and “i” using gffread program.

Please share command line to extract these transcripts.

Thanks

rna-seq
• 2,015 views • link
written by Bioinfonext Bioinfonext

Familiarize yourself with gffread, try something, if it doesn't work, post your command, and come back with the error.

• 0 views • link
written by st.ph.n st.ph.n

0 answers

No answers yet.

Log in to answer this question.

More posts like this