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Sequence logo from a text file

Hi,

I have a text file with results from a screen. I know that "The identifiers in the file are from the hg38 GENCODE V24 basic annotation (table:wgEncodeGencodeBasicV24)"

I then have to make a sequence logo based on the first 15 positions in the transcripts that were found to be significant hits in the screen.

I know that I have to use Galaxy to make a sequence logo, but how do I get my information into galaxy? Do I use my original text file or do I get data from galaxy? Because my file is a txt.file and when making a sequence logo you have to use a fasta file

Thanks in advance.

pssm sequence logo ucsc galaxy
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written by o3964fn4n • o3964fn4n

Hello o3964fn4n!

Please don't ask the same question again: Make a sequence logo from information in a file?

If you are specifically interested in doing this using Galaxy then the question should be posted over at [Galaxy Biostars] : https://biostar.usegalaxy.org/

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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written by GenoMax GenoMax

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