Entering edit mode
7.1 years ago
Nastasiia
▴
10
I am running Maker with augustus as gene predictor and noticed that at err output augustus 'command' is set up not to predict UTRs like here:
running augustus.
--------- command -------------
Widget::augustus: ~/soft/augustus-3.2.2/bin/augustus --species=phaeod --strand=backward --UTR=off --hintsfile=....
Is it usual for Maker to predict UTRs from evidences by itself without augustus 'hints'?
I changed parameters in species_parameters.cfg to 'UTR on' as well.
Thanks, Nastya