This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Find an alternative to the BRLR package

Trying to run an R script and source code file from http://baliga.systemsbiology.net/drupal/?q=node/38 and one of the instructions ask to install the brlr package though running the command "install.packages("brlr",repos="http://cran.r-project.org") " gives a "package ‘brlr’ is not available (for R version 3.3.2)". Is there an alternative I may use? If not, all I need to eventually do is run the cmonkey algorithm on datasets. So has anyone here used or knows how to get the cmonkey algorithm running?

biclustering cmonkey r
• 1,768 views • link
updated by Biostar Biostar • written by ammy22222222 • ammy22222222

It seems the package was removed from CRAN. You'll find archived versions here. I think it's been replaced by brglm. I am not sure if it's compatible with the original cMonkey. The Baliga lab cMonkey web page mentions an updated version dated after brlr was deprecated but the download link is broken. If you really need cMonkey, you should contact the lab.

• 0 views • link
written by Jean-Karim Heriche Jean-Karim Heriche

0 answers

No answers yet.

Log in to answer this question.

More posts like this