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Smoothing densities of genes in R

I have a table with chromosomes bins of 1Mb size and the density of expressed genes. I would like to smooth the densities and get the values. Could somebody suggest how to do that?

rna-seq r
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written by User000 User000

Hi

Could you tell me how did you make table with chromsones bins 1Mb size and the density of expressed genes.

Thanks

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written by bioinformatics.queries bioinformatics.queries

1 answer

What do you mean by smoothing? Have you tried making density plot by taking log2(values)?

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written by EVR EVR

I am not sure, but may be something like this? fit <- ksmooth(genes$pos, genes$value, bandwidth = 10^6) But I also want to take into account each chromosome

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written by User000 User000

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