Incomplete titles in the BLAST output

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7.2 years ago

Lucila ▴ 20

Hi all,

I need help with the BLAST output. The sequences of my database have spaces in the titles, and in the results the titles are shown until that space and I am losing the rest of the title. Is there any parameter or output format to use and obtain the complete titles in the output, without modifying the original titles?

Thank you so much!

blast • 1.6k views

ADD COMMENT • link 7.2 years ago by Lucila ▴ 20

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With outfmt 6 you can add stitle

ADD REPLY • link 7.2 years ago by Asaf 10k

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or if you have more space-separated fields, use salltitle.

ADD REPLY • link 7.2 years ago by Jean-Karim Heriche 27k

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Thanks! And is there any similar tool to use with the query titles? To extract the query titles without spaces?

ADD REPLY • link 7.2 years ago by Lucila ▴ 20

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-outfmt '6 std stitle', column 12 will be the subject`s name, or also you can modify you DB with sed command on linux, replacing " " by "_".

ADD REPLY • link 7.2 years ago by Buffo ★ 2.4k

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