Can ABSOLUTE be used on Illumina 450k array copy number variation data?
Dear all,
Does anyone know if it is possible to run the ABSOLUTE algorithm on copy number data derived from a Illumina 450k bead array (by using ChAMP or conumee package)?
I have tried to run the R version of ABSOLUTE and the GenePattern site but they only allow the select a SNP array.
Thank you.
Best,
Niels Verburg, MD PhD candidate Neurosurgical resident VU university medical center, Amsterdam, The Netherlands
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Yes - I think that this should be possible. Please see a related question: Ploidy Analysis in R