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7.1 years ago
boymin2020
▴
80
I want to use SortSam
of Picard to sort individual WGS data, whose size range is 40~100G.
And I use qsub
command line to submit my script. Here I am not sure how much memory should I distribute to every job (per individual) in the parameter -l s_vmem
. I test several times to check memory usage in one node of our cluster, the memory usage was between 17.5~35G.
PS:Because I have lots of WGS files, it can save my huge time if I can efficiently use the whole memory of the cluster. Of course, the prerequisite is to make sure all of the jobs can be completely done finally.
Thanks for any advice.