This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Understanding KEGG-analysis; determination of activated pathways.

Hi guys,

I have performed KEGG analysis on a set significant peptides obtained from LPS-infected cells. I obtained several different pathways. My main question is how do I determine which pathways have been activated by LPS ?

Thanks.

kegg pathway analysis genes activation
• 2,558 views • link
written by US-geek-012 • US-geek-012

Maybe you should explain more on how you did your analysis. I mean KEGG analysis can mean different things, what tool did you use?, what settings?

• 0 views • link
written by Benn Benn

Using WebGestalt 2013 version Analysis parameters: Id Type: uniprot_swissprot_accession, Ref Set: genome, i.e. entire entrez gene list, Statistic: Hypergeometric, Signficance Level: Top10, MTC: BH, Minimum: 2

• 0 views • link
written by US-geek-012 • US-geek-012

Thanks for more details, I have never used these web tools so wouldn't know how to help. But hopefully some others have used it and can help you instead.

Good luck!

• 0 views • link
written by Benn Benn

0 answers

No answers yet.

Log in to answer this question.

More posts like this