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Installing ABYSS-P from source

Hi all,

I am installing ABYSS,installation works fine. but ABYSS-P is not installed. I have installed open-mpi as well . Is it because of MPI_Init ?

Commands to install:

./configure --prefix=/dir --with-mpi=/dir --without-sparsehash

make

make install

checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking for MPI_Init in -lmpi... no

any suggestions ?

Thanks,

Ron

rna-seq next-gen abyss
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updated by Philipp Bayer Philipp Bayer • written by Ron Ron

1 answer

Are you using Ubuntu?
I assume you installed openmpi, but not the package openmpi-devel which provides the libmpi.so file the installation is looking for (use find or locate after installation to find it)

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written by Philipp Bayer Philipp Bayer

I am using linux,also I cant find the link to the package.Can you send it here?

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written by Ron Ron

Which Linux distribution are you using?

With Ubuntu it should be:

 sudo apt-get install libopenmpi-dev

With Fedora it should be:

 sudo dnf install openmpi-devel
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written by Philipp Bayer Philipp Bayer

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