Make BED file with genomic coordinates and COSMIC identifier
Hello there
I am trying to create a BED file with genomic coordinates tied to cosmic ID's - does anyone know how to do this?
this is the format
chr12 25378560 25378561 COSM19900 p.A146V REF=G;OBS=A;ANCHOR=T
thanks
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bruno.ping •
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I think you can easily do it by writing python script. You can download COSMIC database in text format and concatenate it with your list of coordinates.
You specified the output, but what is the input?