Heterozygosity levels small sample size
Hello all,
I was wondering what is the best way to compare the heterozygosity levels in my data set for which I have ~70,000snps but 4 individuals per population. I am actually interested in comparing the heterozygosity levels between the main broad groups of populations (for each group I have 5-10 populations) and not between the actual populations.
Thank you very much for your help in advance.
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Patrick Brennan •
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pkotsakiozi •
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pkotsakiozi •
1 answer
Is this data in VCF file format? It seems like the best way to achieve your goal is to write a Perl or Python script.
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