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Diamond sequence description

I am trying to make a database using the software Diamond and I was wondering if in addition to the accession number could the sequence description also be added to the output? I have tried using both the blast tabular format and sam format and it does not produce the results I want (ex. NP_957226.1 5'-nucleotidase precursor [Danio rerio]). Thanks for your help.

rna-seq annotation
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written by hlwalsh • hlwalsh

2 answers

You can use this command line option for showing the full subject title (more details are in the manual): -f 6 qseqid stitle pident length mismatch gapopen qstart qend sstart send evalue bitscore

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written by buchfink buchfink

Is there also a way to set the transcripts to sense if they are antisense?

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written by hlwalsh • hlwalsh

Thank you! This worked.

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written by hlwalsh • hlwalsh

Please use ADD COMMENT to reply to earlier answers, as such this thread remains logically structured and easy to follow.

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written by WouterDeCoster WouterDeCoster

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