" -nogaps " is the flag. thanks.
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Zev.Kronenberg
remove gapped bases in MSA
I have a multiple sequence alignment represented as a "mulit-fasta." I want to remove any column that contains a gap.
Thought I would ask before writing my own.
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abascalfederico
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Zev.Kronenberg
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Zev.Kronenberg
1 answer
Trimal is very versatile. Try with "-gt 0.0" http://trimal.cgenomics.org
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abascalfederico
very helpful! Thanks!
trimal -in test -out test_nogaps_trimal -nogaps
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Prakki Rama
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