Thank you. Taking a look at it now. I will get back with you on my findings
• 0 views
•
link
How do get the RAW COUNT from TCGA/GDC for analysis in R? I only want processed data.
Broad GDAC Firehose would be easy way, have a look at below link..
Thank you. Taking a look at it now. I will get back with you on my findings
Have you taken a look at TCGAbiolinks? https://bioconductor.org/packages/release/bioc/html/TCGAbiolinks.html Here is the vignette: https://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html
Thank you I will have a look at my downloaded R packages. I previously did install several bioinformatic packages
Log in to answer this question.
For GDC data, using the browser to select HTSeq count data, of your custom cohort, download the manifest, and use gdc-client to get them all.