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raw count on TCGA/GDC

How do get the RAW COUNT from TCGA/GDC for analysis in R? I only want processed data.

rna-seq

For GDC data, using the browser to select HTSeq count data, of your custom cohort, download the manifest, and use gdc-client to get them all.

2 answers

Broad GDAC Firehose would be easy way, have a look at below link..

https://gdac.broadinstitute.org/

Thank you. Taking a look at it now. I will get back with you on my findings

Thank you I will have a look at my downloaded R packages. I previously did install several bioinformatic packages

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