This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to download a whole ICGC release of processed data?

The ICGC moved from FTP access to their new data portal where they provide releases of the processed data:

https://dcc.icgc.org/releases/release_23

How can I download the whole release?

A machine readable collection of all links is not available, wget doesn't do it because it's Java-script based and opening the page with PhantomJS gives an error as well.

icgc

1 answer

I wrote a script that seems to do it reasonably well:

Log in to answer this question.