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please help me retrieve these sequences

I am trying to find orthologues using wheat protein sequences and so I did Blast on phytozome against three different genomes. in results i got the ids of hits. now i want to retrieve sequences using these ids but i am unable to do so. I've tried batch entrez and biomart. if i search these ids indivisually on NCBI it gives me the desired results but nothing shows up in batch entrez, it says wrong UID. The ids look like this 

GRMZM2G365374_T02
GRMZM2G153815_T01
LOC_Os12g14070.1
GRMZM5G802801_T01
AC209784.3_FGT007
Sobic.009G163900.1
GRMZM2G366532_T01
LOC_Os03g16920.1
GRMZM2G366532_T02
Sobic.001G418600.1
GRMZM2G366532_T01
Sobic.006G055600.2
LOC_Os01g62290.2
Sobic.006G055600.1
LOC_Os05g38530.1
LOC_Os01g62290.1
Sobic.003G350700.1
GRMZM2G310431_T01
AC209784.3_FGT007

i also tried converting these ids using biodbnet but how do i know what kind of identifiers are these. i got them from phytozome. somebody please help. thank you

blast sequence phytozome batch entrez ncbi
• 4,343 views • link
written by ashish ashish

2 answers

Have you tried to use BioMart on the Phytozome site under "tools" menu?

I was able to get sequence using "Current phytozome" --> "Phytozome 11 genomes" --> "Filters" --> "Gene" --> "ID List filter" --> "Transcript name" for the ID's you posted.

• 0 views • link
written by GenoMax GenoMax

genomax2 thank you very much. i got the sequences using biomart on phytozome. i tried this earlier but was using gene name instead of transcript name.

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written by ashish ashish

Please use ADD COMMENT to reply to earlier answers, as such this thread remains logically structured and easy to follow.

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written by WouterDeCoster WouterDeCoster

alright i will take care of it from now onwards. i am very new to biostars.

• 0 views • link
written by ashish ashish

No problem and welcome to biostars. In addition, if the answer from genomax2 solved your question, please mark the answer as "accepted" to flag this thread as resolved.

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written by WouterDeCoster WouterDeCoster

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