This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Download Uniref ID though wget

Hi,

I would like to download the UNIREF 100 id

http://www.uniprot.org/uniref/

and get at the end a file with:

Cluser ID <tab> Common taxon ID

We can download it though the button "Download" but since the file will be big (I think). I am wondering if there is a way to download it though "wget". I would like to run it in my server and let it download all the night.

uniref
• 2,592 views • link
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by Picasa Picasa

Possibly. From this top level directory. Select UniRef100 if that is what you want. You would need to do some reformatting if you need the data in some specific format that is not available there.

• 0 views • link
written by GenoMax GenoMax

1 answer

Here is a preview (first ten entries from UniRef50): http://www.uniprot.org/uniref/?query=identity:0.5&limit=10&format=tab&columns=id,commontaxonid of tab-separated result view, which is downloadable.

For a compressed download, try http://www.uniprot.org/uniref/?query=identity:0.5&format=tab&columns=id,commontaxonid&compress=yes (63 MB)

• 0 views • link
written by Elisabeth Gasteiger Elisabeth Gasteiger

Log in to answer this question.

More posts like this