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Total RNA RNA-seq database

Hi,
I am looking for some sort of database/compilation of RNA-seq data that allows me to quickly search by RNA-extraction protocol. More particular, I am interested in ALL GEO deposited RNA-seq datasets which extracted total RNA (as opposed to polyadenylated extraction protocols). Is there are list/database that contains this information?

Thanks

rna-seq extraction protocol
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updated by Biostar Biostar • written by lkmklsmn lkmklsmn

Keep in mind that just because it's labeled as "total RNA" doesn't mean it's actually total RNA and not polyA selected.

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written by igor igor

2 answers

You could search NCBI SRA this way.

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written by GenoMax GenoMax

For human data, TCGA and GTEx databases are AFAIK total RNA prepped libraries for RNA-Seq.

For raw fastq files from RNA-Seq experiments from TCGA, one would require application for access. Good luck!

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written by nwon • nwon

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