Build Ensembl genome index specific to long non coding RNA
Can someone suggest a good site to get the gtf and fasta file format specific to long non coding RNA. I used http://www.gencodegenes.org/mouse_releases/current.html and its giving me errors in calculating reads with my raw read-files after mapping with the genome built using the files at this site.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
RNA-seq anlaysis > coding region vs. non coding region
written by maplewj •
-
R code for separation of coding and non coding rna
written by Ashok •
-
Dexseq non-stranded index error
written by bart •
-
Fasta file for Whole exome sequencing analysis
written by tomer9w •
-
Coordinates long non-coding RNAs
written by luffy •
-
Accurately identifying long non coding RNA from stranded total RNAseq(rRNA depleted)
written by m.sadman.sakib
-
GTF file in Ensembl database for RNA-Seq analysis
written by wangdp123
-
Extracting reads from Pacbio Sequel BAM by read name
written by roryC •
-
What does Ensembl/Genecode gene_type "processed_gene" really mean?
written by james.lloyd
-
Plotting Coverage in R
written by carycary •
This old post may be helpful.
Non-Annotated Long Noncoding Rna Candidates
These two below are recent:
Database for Non Coding RNA
GTF/GFF for non-coding RNA
You may find more useful posts on the right panel.