Biostar Beta. Not for public use.
differential expression and meta analysis of microarray
0
Entering edit mode
2.8 years ago
Edalat • 30

hello All, I want to do differential expression of Microarray data and then to do meta analysis.do you know R package that do two works?

ADD COMMENTlink
0
Entering edit mode

I heard about the COMBAT batch correction and cross-platform normalization method then you can merge the datasets by means of common ENTREZ identifiers to obtain common space across all platforms.

ADD REPLYlink
0
Entering edit mode
16 months ago
Farbod ♦ 3.3k
Toronto

Dear ED, Hi

Have you tried MAMA ? (manual)

And please check these "Key Issues", too.

~ Best

ADD COMMENTlink
0
Entering edit mode
3.2 years ago
newbiebio • 80

Try 'affy' and 'limma' to identify deferentially expressed genes. "bioMart" for meta analysis.

ADD COMMENTlink
0
Entering edit mode

thank you for a reply,do you know friendly tutorial for this?

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.1