Haplotype Mapping from a VCF file (Homologous SNPs)

Dear All, I'm looking for mapping haplotypes in a VCF file. Is there a way I can at least plot the markers and see visually, or any way I can map haplotype blocks from a single sample VCF file (Not a multisample) ?

Thanks.

haplotype snp vcf

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updated 6.3 years ago by gubrins

• written 9.6 years ago by sv91707

1 answer

Heys, I'm interested in doing the same as you, did you solve it at the end?

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written 6.3 years ago by gubrins

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