As long as this is kept is mind: A: fastq dump error
how to get SRA data
Dear all
how can i get this data from ncbi ? https://www.ncbi.nlm.nih.gov/sra/SRX1835119[accn] thank you
3 answers
A simple script to use lftp to download SRA data. Then use fastq-dump to decompress data
SRAToolkit download and decompress data at same time. If you have many sra data to download. You can use the script to download and decompress youself in parallel.
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Chun-Jie Liu
You can use sra toolkit for it:
Or use SRAdb in R bioconductor. How To Download All Sra Samples At Once ?
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Use SRAToolkit based on instructions here. Otherwise you can search EBI-ENA and download fastq's from there directly.